YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4197, orf1...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQIEKKPI SFANIALGAG LNLAEVTTLG QPLEVIKTTM AANRSLTMPQ AAKFVWSRGG  60
   61 ILGFYQGLIP WAWIEASTKG AVLLFVSAEA EYQFKKLGMN NFVSGMGGGI TGGLAQAYLT 120
  121 MGFCTCMKTV EITRSKQANT PGVPQQTSFQ VFKEIYRKEG IRGINKGVNA VAIRQMTNWG 180
  181 SRFGFSRLAE ESIRSLTGKS ESQKLSAWEK IASSVIGGGL SAWNQPIEVI RVEMQSKTND 240
  241 PNRPKNLSVA GAFKYIYQQN GIKGLYRGVT PRIGLGVWQT VFMVAFGDIF KRMLNTDGTG 300
  301 H

Type	Start	End	Confidence
Cytoplasmic	1	53	0.77
Transmembrane Helix	54	74	0.77
Non-Cytoplasmic	75	106	0.84
Transmembrane Helix	107	127	0.73
Cytoplasmic	128	274	0.78
Transmembrane Helix	275	290	0.41
Non-Cytoplasmic	291	301	0.56