YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13663, orf...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAVLISLLT ILLGFVLILI IFFIQTGGLK SLVSTTTSKK SSLYHPTFLI LGANNSGKTS  60
   61 FFYKLLQLSN DDEIDDKANT TTVAATVSSL EPNVTKINLP ISNPSIGKPF QLIDYPGHLK 120
  121 LQKVFERLII DEITLKNLKG VVYMIDSSSV NINDDTNLES IVKFLYNLFS ITERIPNGVD 180
  181 FLIAINKTDL FDSVPVHKIK TKLELEINKL IRHEIENVEK TSGIDDNDND NGNQNSNGGG 240
  241 GNSSNGDNSD GINGESLRAF WMSVVGSGNF TFDKLEGNVD FVGGSVLKNK ISQWENWFDE 300
  301 KVVNP

Type	Start	End	Confidence
Cytoplasmic	1	6	0.64
Transmembrane Helix	7	29	0.77
Non-Cytoplasmic	30	305	0.87