YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13693, orf...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.72
Transmembrane Helix	12	35	0.82
Non-Cytoplasmic	36	85	0.78
Transmembrane Helix	86	106	0.72
Cytoplasmic	107	112	0.53
Transmembrane Helix	113	134	0.88
Non-Cytoplasmic	135	143	0.55
Transmembrane Helix	144	166	0.90
Cytoplasmic	167	173	0.54
Transmembrane Helix	174	197	0.88
Non-Cytoplasmic	198	208	0.56
Transmembrane Helix	209	228	0.94
Cytoplasmic	229	330	0.64
Transmembrane Helix	331	347	0.39
Non-Cytoplasmic	348	353	0.55
Transmembrane Helix	354	373	0.82
Cytoplasmic	374	395	0.62
Transmembrane Helix	396	418	0.85
Non-Cytoplasmic	419	425	0.53
Transmembrane Helix	426	459	0.75
Cytoplasmic	460	479	0.56
Transmembrane Helix	480	497	0.71
Non-Cytoplasmic	498	515	0.84
Transmembrane Helix	516	535	0.97
Cytoplasmic	536	561	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSQLPPLTT RITQIICAIA WCLVAAGPVF GFAAIKPIFI SQHIYENKCD LSTTTTTTTT  60
   61 TTTTTTTNEF ISNDAKCVEQ DLSLNFLFTI ACMVTNISAL PVGSILDSYG PKITGIIGSI 120
  121 LLTLGSLSLK FASHIEKIQI FDGYLIGYTL LALAGPFVFI SCFQLANCFP QNSGLILALL 180
  181 TGAFDSSSAL FLFYRLYYTN VSPISIDKFF TLYLIVPIFI FLCQMFIMPK DSYKTVGTLA 240
  241 KIAETGIDET GKPLDSNLLT PEDQQQQQQR DNSATAAIVD VTEYYQPTIS ETTSLLMRRA 300
  301 SAPTSRREST ASRMSYSSIK SRYEQEADSK LIHSSGGVFG VLHGYSITEQ LNSGWFILMT 360
  361 LFTTIQMLRI NYFVATIKSQ ELYLYHGNES LATTINHFFD LALPLGGIFS IPFIGLILDN 420
  421 LTTLTALYIL TGLSLFIGVA GLVSWLPATY AGIIVLVVYR PFYYTAVSDF CAKVFGYDNF 480
  481 GTVYGTIIAF SGVCNILQQV MDKATHEFFN MNPGPINTLL VVLTAVFGFA LIIFVKSKEA 540
  541 HIKRKNLEME AQDASNRPVP V