YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1852, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINFSSISI KPTWTYHNYP PINKMAQPQT NSIYDSIDKL SVSPIPAAAL GGSLVLKGLF  60
   61 GTNATPVNVG ATGGTGSAFK LGRKVAVARP TRLSCFTFGG ASLLGAWMMY DGDPVNASGF 120
  121 NFAWSALYLI VNGKESISGI FKGRITPLGL GGLALFNTGL YGREFFWSKN SPFK

Type	Start	End	Confidence
Cytoplasmic	1	89	0.86
Transmembrane Helix	90	110	0.88
Non-Cytoplasmic	111	116	0.80
Transmembrane Helix	117	133	0.56
Cytoplasmic	134	142	0.47
Transmembrane Helix	143	162	0.83
Non-Cytoplasmic	163	174	0.52