YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9402, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.95
Transmembrane Helix	64	84	0.88
Non-Cytoplasmic	85	126	0.85
Transmembrane Helix	127	147	0.59
Cytoplasmic	148	197	0.47
Transmembrane Helix	198	214	0.62
Non-Cytoplasmic	215	223	0.51
Transmembrane Helix	224	249	0.68
Cytoplasmic	250	250	0.41
Transmembrane Helix	251	272	0.69
Non-Cytoplasmic	273	278	0.42
Transmembrane Helix	279	301	0.86
Cytoplasmic	302	349	0.56
Transmembrane Helix	350	368	0.74
Non-Cytoplasmic	369	393	0.68
Transmembrane Helix	394	415	0.88
Cytoplasmic	416	423	0.58
Transmembrane Helix	424	443	0.76
Non-Cytoplasmic	444	465	0.77
Transmembrane Helix	466	488	0.88
Cytoplasmic	489	502	0.92
Transmembrane Helix	503	523	0.91
Non-Cytoplasmic	524	535	0.86
Transmembrane Helix	536	557	0.92
Cytoplasmic	558	563	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSKKKPST PQSPKDSTPV VYSSKKQLGQ QQQHLRSTSI FKKSPVYDLL HYFEKAPDQW  60
   61 TARYILILTA IILRAAVGLG SHSGYHTPPM FGDFEAQRHW MELTINLPIS QWYFFDLQYW 120
  121 GLDYPVLTAY HSFICGKLGN FINSSWFALN TSRGLETDDI KTFMRITAII SELIIYIPSI 180
  181 LKIANILGKK SNINRMDQII IALIIINQPH LILIDHGHFQ YNSIMLGFFI YSIIDLIKGN 240
  241 LIMASVWFIS CINFKQMGLY YSLFIFFYIL SQLNSLSKFF LVGVTVLLTQ FIYLLPFIWF 300
  301 HPDSILQIVY RVFPFNRGLF EDKVANSRCT SNILIKYCEI LTDASQLSKL ALIATLLTTI 360
  361 PINLLIFYKI KTNNNTTKKA NTEITPSSSS SSSLPLNIVA MIYGFALNAL SFYLFSYQVH 420
  421 EKSILIALIP ISLLLLINPQ QDITMIQFIN TVGTFSLYPL LKKDGLIMQY FVLNFLINWL 480
  481 IGFDLIIVNP NPQKNSKSSS KLLNINNLII WIIYFMMIIY HIIDFTIDPP LKYPDLWVIL 540
  541 NTTISFVAFS YFWLWLVYRI IKL