YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCH1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.92
Transmembrane Helix	27	49	0.92
Non-Cytoplasmic	50	60	0.78
Transmembrane Helix	61	83	0.85
Cytoplasmic	84	91	0.63
Transmembrane Helix	92	110	0.90
Non-Cytoplasmic	111	118	0.71
Transmembrane Helix	119	142	0.90
Cytoplasmic	143	153	0.87
Transmembrane Helix	154	175	0.91
Non-Cytoplasmic	176	193	0.84
Transmembrane Helix	194	215	0.91
Cytoplasmic	216	255	0.92
Transmembrane Helix	256	272	0.73
Non-Cytoplasmic	273	290	0.69
Transmembrane Helix	291	310	0.64
Cytoplasmic	311	319	0.74
Transmembrane Helix	320	339	0.90
Non-Cytoplasmic	340	346	0.62
Transmembrane Helix	347	367	0.80
Cytoplasmic	368	373	0.62
Transmembrane Helix	374	393	0.93
Non-Cytoplasmic	394	405	0.70
Transmembrane Helix	406	429	0.89
Cytoplasmic	430	436	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKHLHHVSH TIKSYLSTLI ALENLKVVAF LISLLSCLVA GSILLFTLYT SSFHEVLGLS  60
   61 YLQINMISSL SALGMYFCLP VLGYLADSYG PALLSLFSIW FFCPSYFVNS YLVSTQSGSV 120
  121 IGFCVCFCFI GLATSSLYFS SLITCARICP DHKGLAISLP ITCYGLSALL GAQILKLPYF 180
  181 HRHDVLDLEV VFSFFAWLYL VVGIASFVSS SIVIVESELL FGVTPDEETA LLELTPTRSL 240
  241 EPPNHRQRFV SFVKDPSAWI LLVSLILNIG PMESYQNNLS SILKHTNGAD LPNQVSIMAA 300
  301 SSTGARLLLG VLSDYSSKYV CRVWLLVVVI VVGVAGQMSE TSAILNGVSY GGMFTIYPTI 360
  361 VASIWGIDIM GSTWGSFMVA PALGSVIFSM FYGRNADSCS DCLSHYFYTT AGAMIVSCIF 420
  421 VLLAWKIWYA RGFTRF