YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sp\|Q9P8E3\|SC61A_...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.99
Transmembrane Helix	33	55	0.93
Non-Cytoplasmic	56	74	0.94
Transmembrane Helix	75	95	0.91
Cytoplasmic	96	115	0.88
Transmembrane Helix	116	137	0.88
Non-Cytoplasmic	138	144	0.76
Transmembrane Helix	145	167	0.92
Cytoplasmic	168	174	0.85
Transmembrane Helix	175	195	0.70
Non-Cytoplasmic	196	243	0.67
Transmembrane Helix	244	265	0.89
Cytoplasmic	266	285	0.63
Transmembrane Helix	286	310	0.81
Non-Cytoplasmic	311	360	0.69
Transmembrane Helix	361	380	0.87
Cytoplasmic	381	415	0.87
Transmembrane Helix	416	435	0.81
Non-Cytoplasmic	436	439	0.44
Transmembrane Helix	440	461	0.53
Cytoplasmic	462	479	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFRVLDLV KPFSPFLPEV IAPERKVQFQ QRVMWTIITL LIFLVMSEIP LYGIASSDSS  60
   61 DPLFWLRMML ASNRGTLMEL GISPIVSSGM LFQLLQGTKI IHVDMQNKND RETFQTAQKL 120
  121 LAILLAVGQA TVYVLTGMYG PPSSLGVGVC SLLILQLVFA STIVILLDEL LQKGYGLGSG 180
  181 VSLFTATNTC EQVFWKAFAP TTSTSAKGTE FDGAVVAMFH LLGSRKDKKR ALIESFYRPN 240
  241 LPNMFQLLAT LLVFFAVVYL QGFRIELPMK STRQRGPYGS YPIRLFYTSN IPIMLESALA 300
  301 SNIFIISQLL FMRWPNNLFV KLLGTWDARA GSSQLYANGG LAYYIQPPFN FTDALLDPIK 360
  361 TTIYIAFVLG SCAVFSTTWI EISGTSPRDV AKQFKEQGLV IAGHRDTSAY KELKKIIPIA 420
  421 AAFGGATIGA LSVVCDLMGT LGSGTSILLA VTTIYGYYEL AVKEGGFNKS IVSGFSDGI