YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.59
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLIFFFFC IGLCFTNNIL STLLSPIQIF LSHLISLTST QIFFSLSKTW FTNQINFITL  60
   61 LLIIIITTTT KLIKMFTCNT CNLQFPAAED QRSHMKSEWH RYNLKRRVAQ LPPITEDLFN 120
  121 SKVSTLTNTE ETKQKQLTKK EQRRKEKEAI LEQKRQILEQ AKKAMLAKMK ENGGELPSPK 180
  181 EESSNIDSNK EQQQQQKDED DKDGDKLEEE EITPEQHEEK MLAQKLANKL EIPPTTCLFA 240
  241 HPKYNHNFDT IDENIEHMFK QHGLYIPERK YLIDKQGLLE YLGEKIGFGF CIVCNYQGRT 300
  301 AEAAREHMQQ KRHMRIPYET EDEKLEISKF YDFSSTYDNN VVVVDGDGEE EDGDWEDLSG 360
  361 EEEDDEDDDE ELPPVERDAI YQHGNELHLP SGAVVGHRSM ARYYRQNLAP DRELSEGQGT 420
  421 VIAAETRHML TLKDREELAT KKRTWKKEKK MEDLNDRRAA KFINNQPHFR DPLLQ

Type	Start	End	Confidence
Cytoplasmic	1	4	0.55
Transmembrane Helix	5	30	0.70
Non-Cytoplasmic	31	475	0.66