YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.55
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDSYTLLRQ RQKSDNSQTS TELESTPLSK RLHYYHELDE WQQDNHFIKS GYVKQTNSYK  60
   61 ECFKSLTYLH NESVNIYSHL LPSSISFWVI LYYINYILPK YDNYLGVWEK LNFLQFGLAC 120
  121 TFCMFMSSTF HCIKAHSHPV SKFGNQLDYF GIVILITCSL ISIILFAYYD YPWYRNIFVG 180
  181 LSLFFGTVCT VLTLDRKFST NEYRPFRSFM FILFGLSGAL PIVNSMYMFG FEITRQKAGV 240
  241 EWLILEGVFY IGGAVLYAAR VPERFTHVED DEHTLLNNPS SGTFDIFGHS HQIFHVMVVI 300
  301 AAFCHWKGLV QSYHYLHLQT LPNL

Type	Start	End	Confidence
Cytoplasmic	1	75	0.96
Transmembrane Helix	76	96	0.90
Non-Cytoplasmic	97	112	0.89
Transmembrane Helix	113	133	0.94
Cytoplasmic	134	146	0.89
Transmembrane Helix	147	169	0.91
Non-Cytoplasmic	170	175	0.78
Transmembrane Helix	176	194	0.94
Cytoplasmic	195	208	0.77
Transmembrane Helix	209	230	0.89
Non-Cytoplasmic	231	237	0.88
Transmembrane Helix	238	259	0.68
Cytoplasmic	260	290	0.68
Transmembrane Helix	291	309	0.67
Non-Cytoplasmic	310	324	0.43