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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.11249, orf...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVQFQQLLL LLISIIKLCQ ADDNDNSFFQ PVSQPSLNYK DTGNRIGLLG SFDALSFYSF  60
   61 VNSSQIVNDP DTSVSIFQKK RDVSNSSSSS TSFSNSLYLQ DITNNYSLKF ADINGQVNQL 120
  121 FKISNDSVVL NGNFTSFNNQ SVISPIIFTI SSREVTKIFS DDINGSVKTI FLDNDLIYLG 180
  181 GNFKFNNTYS AAVYNITAKK VHSTPFQGFG PNSSINSIAK VLNGDKEKED NEEELGSILF 240
  241 GGQFDTLGLS DLLIHNITSN NTKKHNTSNT SIISAEQLIS LRHGTFTSVN GESSEEDAAA 300
  301 IVCPSDNKEW AAQKNSGAEW KVELPDEMKG IHPTKARIYI PEGPNGIKLF RIYSYPNNGI 360
  361 MNLTYIDPAT NELAYCDAWC PLLNYDDLND HVDNNILNAT ELNENNSVFV DEQDGSYFQY 420
  421 YDPSTKTKNL GYASNFQEFA FVDNVGVDTV GVTIIDWYGD QGILAGFELY QNAITVYGND 480
  481 SLNDPNCQSD ASDDTNNNAV INSGSFKSVQ SINPAITNTD YLVTSDTNAK ITLYPNISYS 540
  541 GNYSIIMMTP GCAYDGSCAR RAIVNVTVVG DDNDVLSTKT IYQNNENNKF DYLFYGHLNG 600
  601 SKTSTSSNRI EISYMGTVTE GVQDPYMVVD KVIANIVSLD NYYDKNSTNH TRNNTGYELA 660
  661 PIKLNGLFEY SLANFSQFDE QLVHYKRNNK TYISLNNTFV GNSSINLLSG ELSNQSRIDQ 720
  721 ISLGPKQQDG NKQSLLLLGK FESDSKNITL SNNNLITLTI DSYNNTLNET NIELPSRLTK 780
  781 RDTQTILGGN FNNSITRLIE LPGCFLAIGD FALSGKDGSS SIKDLSNNNQ SVSSANNFAL 840
  841 YSDDQWYSFG NDYTSNDFNQ FTNLTLDSVE YYVFSGNGQF RTWDNDNFKW VTDPTKQLNL 900
  901 TQAAQINDHQ QILGGTGFST MQFQSVDQAY IADGNFSKFG IDVIANKSFM ISNSYYVNSS 960
  961 LSVIGGKFET KDVKNVGLIS NSDPNNTISA LQGSIVWGDN TLIQSLYVDS SDEYLFMGVN1020
 1021 GSVQINEQTN VTGIVIYDLV NNTFTSFQPA ELSHSNGDPI SVNSMVLFDK GNKLLVGGDF1080
 1081 DLAGSLSCPS LCVYDITNTR WINPQNDATT TQSIGGVVTD MKFFQSNQVL ITGNGLQLNG1140
 1141 NSGIKFLIYN FNSNSFSVKD SLNKIDQTVE KFILNDENNK NLDGRMIAFG EKSISGFDGS1200
 1201 NWQRIDSDII YENFTKFNDM KLLTLDKPSD YNQTYFDKSQ IFTIAGVFRL KDYGLVNMAL1260
 1261 FNGTSWIPYV FTSLQQQKLT GSGSGSGSGS RSSSLQIGQI QSILIDDSYR FQSSDDLKKT1320
 1321 NKNLSRGKVV GISLACALGS TTLLGLLYII PYFALFKNRK DGYFQPERIH EDEMMDAVNP1380
 1381 EDLLHEIDLQ REK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle