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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.9390, orf1...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIKNNSPT IKQRPTGVTT TNSSSSIDVV TTSAPRYEDN FFNDETTHEI TSETNSTSSS  60
   61 STIFQYLATI SKKLDSLGVE TRGIERIQPY ERSTNRTKQF ISVMGLWLSA CGGLSSMSSF 120
  121 YLGPLLFELG LRNTLLAGLL GEILGCFIAA YCSLMGPRSG CRQMVSGRFL FGWWFVKLVA 180
  181 LVAIIGVMGW SVVNSVVGGQ ILSSVSDDKI PLWAGIVIIA AISLIVAIAG IKQLIRVEAF 240
  241 LSIPVNCAFL LLYIVASQKF DYLTWKDAVV ATEGSEYSAA ATVKGNWLSF FSLCYSITST 300
  301 WGTIASDYYI LFPENTPDWE IFAITFFGIS IPTTFVGVAG ILIGNVALTY QPWGDAYKKL 360
  361 GMGGLLNEAF KPWGAGGKFL LMIIFLSLIS NNIINTYSAA FGVQLAGTMF AKVPRWLWAI 420
  421 LLTAIYLICA LVGRNEFSTI LGNFLPMIGY WVSMYFIMLL EENTIFRTDK FKYLFTKEFP 480
  481 RVNKEEEQEE EDGLDSSIVH HPIDARIIGT PLRQNQHYNF SIWNDYDKLT QGLAATASFI 540
  541 IGATGAAVGM SQAYWIGPLA RRIGGEFGGD IAMWLCMGFS GLVYPPLRYL ELKKFGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle