YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9390, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.98
Transmembrane Helix	103	123	0.93
Non-Cytoplasmic	124	133	0.80
Transmembrane Helix	134	155	0.91
Cytoplasmic	156	172	0.84
Transmembrane Helix	173	193	0.93
Non-Cytoplasmic	194	209	0.93
Transmembrane Helix	210	231	0.92
Cytoplasmic	232	238	0.82
Transmembrane Helix	239	257	0.92
Non-Cytoplasmic	258	286	0.93
Transmembrane Helix	287	311	0.84
Cytoplasmic	312	320	0.91
Transmembrane Helix	321	344	0.92
Non-Cytoplasmic	345	374	0.91
Transmembrane Helix	375	395	0.85
Cytoplasmic	396	414	0.74
Transmembrane Helix	415	434	0.92
Non-Cytoplasmic	435	439	0.80
Transmembrane Helix	440	460	0.87
Cytoplasmic	461	531	0.95
Transmembrane Helix	532	556	0.83
Non-Cytoplasmic	557	570	0.80
Transmembrane Helix	571	590	0.90
Cytoplasmic	591	597	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIKNNSPT IKQRPTGVTT TNSSSSIDVV TTSAPRYEDN FFNDETTHEI TSETNSTSSS  60
   61 STIFQYLATI SKKLDSLGVE TRGIERIQPY ERSTNRTKQF ISVMGLWLSA CGGLSSMSSF 120
  121 YLGPLLFELG LRNTLLAGLL GEILGCFIAA YCSLMGPRSG CRQMVSGRFL FGWWFVKLVA 180
  181 LVAIIGVMGW SVVNSVVGGQ ILSSVSDDKI PLWAGIVIIA AISLIVAIAG IKQLIRVEAF 240
  241 LSIPVNCAFL LLYIVASQKF DYLTWKDAVV ATEGSEYSAA ATVKGNWLSF FSLCYSITST 300
  301 WGTIASDYYI LFPENTPDWE IFAITFFGIS IPTTFVGVAG ILIGNVALTY QPWGDAYKKL 360
  361 GMGGLLNEAF KPWGAGGKFL LMIIFLSLIS NNIINTYSAA FGVQLAGTMF AKVPRWLWAI 420
  421 LLTAIYLICA LVGRNEFSTI LGNFLPMIGY WVSMYFIMLL EENTIFRTDK FKYLFTKEFP 480
  481 RVNKEEEQEE EDGLDSSIVH HPIDARIIGT PLRQNQHYNF SIWNDYDKLT QGLAATASFI 540
  541 IGATGAAVGM SQAYWIGPLA RRIGGEFGGD IAMWLCMGFS GLVYPPLRYL ELKKFGR