YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4063
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.99
Transmembrane Helix	62	83	0.93
Non-Cytoplasmic	84	96	0.73
Transmembrane Helix	97	120	0.77
Cytoplasmic	121	150	0.76
Transmembrane Helix	151	172	0.80
Non-Cytoplasmic	173	184	0.73
Transmembrane Helix	185	204	0.93
Cytoplasmic	205	211	0.76
Transmembrane Helix	212	234	0.87
Non-Cytoplasmic	235	261	0.95
Transmembrane Helix	262	282	0.91
Cytoplasmic	283	301	0.89
Transmembrane Helix	302	323	0.94
Non-Cytoplasmic	324	353	0.92
Transmembrane Helix	354	376	0.86
Cytoplasmic	377	404	0.93
Transmembrane Helix	405	426	0.84
Non-Cytoplasmic	427	433	0.68
Transmembrane Helix	434	455	0.89
Cytoplasmic	456	474	0.84
Transmembrane Helix	475	495	0.94
Non-Cytoplasmic	496	504	0.76
Transmembrane Helix	505	525	0.91
Cytoplasmic	526	575	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSGIHTPHE IHPVVSQVHV DDMGIASILS NKNITINVDH VIDSDEAMLL AIGYRQELRR  60
   61 EFSLWSIFAV SFSVLGLLPS IAACFDYQQL VVGMSPLPWL IAMIFITSVA YSMAEIASAF 120
  121 PCSAGTPYAV SQLAPKKYAS FLTWFTCWTN WSCQITAAPS VSYSCACMML ALHSFTDPSF 180
  181 VASNAQIFGL TTGIQVLCAF MACFPTKWVA RFSSAGTTCN IVFLVVVFIM ILGGNKRDQI 240
  241 KEGISKFNSN STAWGLDNQA EWPTGLSFLI SFMGVIWAMS GYDSPFHLAE ECSNAAVAAP 300
  301 RAIVLTSTVG GLIGFMFMIA IAYTLVDLNQ ISADPEGLGQ PFVTYLTQIM DKNLVIGATA 360
  361 LTIISSFFMA QNCLLASSRV TYAYARDGLF PLSGIWKKVS PKTQTPINAV IMNFIVEELL 420
  421 LLLIFGGDVS IGSIFSIGAL AGFISFTMPT LLKITYARKT FQPGPWNLGK WSEPIGWVSV 480
  481 AFVGLMVPIL CFPTVKGADL TPTEMNWTCL VYFGLILLTT IWFVVDARRW YVGPRTNISE 540
  541 EDIVYGEKTE DEGDEIPDVI DGQKVSISST EKRYQ