YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.176, orf19...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYDQMWDAC TSFWRVIKDF RKSTYDGFDD PHSTMMRAYP EVPEWAYLII VVISLVLAIL  60
   61 CVKLYPAQTP VWGIFFALGI NFVFLIPLTT IYARTGFAFG LNVLVELIVG YAIPGNGLAL 120
  121 AFIKALGYNI DAQAQNFVND LKQGHYAKLP PRAVYRVQLL SIFVSSFIQL GILNFQINGI 180
  181 KDYCKPGNTQ KFTCPGGRTF FSASVLWGVI GPKKVFNGLY PVLAWCFLIG FLLAFPCIAI 240
  241 KKYAPRKYVK YFEPSIVIGG FLKYAPYNLS YYIPGVYVSY AFMSYIKRKY EAWWQKYTYV 300
  301 LSTGLNAGIA FSSIIIFFAV MYHEKDINWW GNTVMYSGVD YAMTGWLNAT VDAPDGYFGP 360
  361 RRGNFP

Type	Start	End	Confidence
Cytoplasmic	1	44	0.84
Transmembrane Helix	45	66	0.93
Non-Cytoplasmic	67	71	0.70
Transmembrane Helix	72	93	0.91
Cytoplasmic	94	102	0.62
Transmembrane Helix	103	123	0.82
Non-Cytoplasmic	124	153	0.76
Transmembrane Helix	154	177	0.78
Cytoplasmic	178	193	0.67
Transmembrane Helix	194	211	0.71
Non-Cytoplasmic	212	218	0.76
Transmembrane Helix	219	240	0.92
Cytoplasmic	241	296	0.51
Transmembrane Helix	297	321	0.88
Non-Cytoplasmic	322	366	0.42