YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8866, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISNGKDTSL KQVEAEVSTK STSITPTKNE LSNSTSKPTP SNDKSTEQTK EQLVVNEKEK  60
   61 KKQAFVTRTI WTFVMIGGFF AILASGHLAL IIMVSVFQML TFKEVIALTS EPARDKKIPW 120
  121 NRSLNWYFLG TTWYYLDFPA LFDFFQESVY SSKFLTLLVK NHKFISYSLY IAGFVFFVWT 180
  181 LKKGYYRFQF AQLCVTHMTL LLVVFQAHLI IDNILQGIIW FFLPATLVIV NDIFAYLCGI 240
  241 TFGRTQLIEI SPKKTVEGFV GAWICTGIAG VIASHILSKS DYMICPAENL STHLYNFPHC 300
  301 DLNPIYIPQV YQLPANIVEL TGHELITFKP FYFHAAILAT FASLIAPFGG FFASGLKRAF 360
  361 GIKDFGDTIP GHGGITDRFD CQFLMGSFTY LYYHTFVSNQ NVNLGHVLQL AIMNLSVPQL 420
  421 LQLIKSLLKY LNREEVLTSE QLSRIFDILE N

Type	Start	End	Confidence
Cytoplasmic	1	68	0.85
Transmembrane Helix	69	92	0.87
Non-Cytoplasmic	93	163	0.72
Transmembrane Helix	164	181	0.96
Cytoplasmic	182	189	0.82
Transmembrane Helix	190	210	0.92
Non-Cytoplasmic	211	217	0.84
Transmembrane Helix	218	240	0.91
Cytoplasmic	241	258	0.82
Transmembrane Helix	259	277	0.96
Non-Cytoplasmic	278	331	0.97
Transmembrane Helix	332	353	0.94
Cytoplasmic	354	451	0.89