YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.151
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.92
Transmembrane Helix	12	32	0.91
Cytoplasmic	33	41	0.87
Transmembrane Helix	42	62	0.90
Non-Cytoplasmic	63	85	0.90
Transmembrane Helix	86	106	0.92
Cytoplasmic	107	122	0.86
Transmembrane Helix	123	144	0.92
Non-Cytoplasmic	145	171	0.91
Transmembrane Helix	172	192	0.92
Cytoplasmic	193	230	0.92
Transmembrane Helix	231	249	0.96
Non-Cytoplasmic	250	255	0.74
Transmembrane Helix	256	277	0.93
Cytoplasmic	278	293	0.92
Transmembrane Helix	294	318	0.87
Non-Cytoplasmic	319	325	0.84
Transmembrane Helix	326	347	0.88
Cytoplasmic	348	465	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVYIYKED RFLVLSVYFI LLGFCGFINF KFSKHLEKIN KACILWTIYT VLAIDFLLIF  60
   61 SSTRTNSIKD ILTKFDNSRS GWPDPLAFII GLQSSSFTLT GYGMLFSITD EVKTPEKNMP 120
  121 RGAISAVFMA IVTGVIFIIP ILTILPELEI LLDETPNIMP IDLIFKLSTE SYLISFLMAC 180
  181 LMIGTMIFQS IGSLTTASRS TYALARDGGL PFADLWTQVN SIEDYKLPKN ALFLSMVICA 240
  241 ILSSLSLISQ SAFNAFMGAA VISLALANGV PILCLMINKR KKVRGAAFKL GKIGWIINGL 300
  301 SIFWILLSVF ILCMPPVIKH LTWSNMNYAI LVIISFAIIA SLGYKTWGEK SFTGPVIDND 360
  361 YFELNNLETN VSSSRQAGAG TAGAGGASTA SGDVNDDDFV IIGNDEEEEE EEDDDDDEPD 420
  421 TNSSKSKTKD WDKEEEEEDD MILDNKLPPI KNKKRTNDYQ PLEDH