YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5693
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKKKKSTK KKKFLNNSFF MALAETVIRK VKKLGLVPKA IAILPRLSLL VAALSVLWLV  60
   61 TLPQDGNYRN VYISENALMP AQANSYFRES EWNIVRGYRE EIGKMEEWSV ADRNEVIASW 120
  121 LVDSGLQISY HENGFANNTL YAIMHAPRGE NTEAMALVVP WTNSDNEYNE GAMSLAVALA 180
  181 RYFTKMSIWS KNIIFVFPET GHRPLRSWVE AYHTVLDDTA GSIEAAIIME YGKNGDYFEY 240
  241 YDMFYEGLNG QLPNLDLLNT ANVMTYHEQI PCAMQGMSDR VINYSTRLQT LFRGILKLTL 300
  301 VGLTDEVHGC EAFSGWQIQA FTIKVRGTEG KDVTQFGRIV DSTFRSVNNL LEKFHQSFFF 360
  361 YLMLSPKHFV SIGTYLPSAI LLAVSYALSS VSAVVVAGFD FRKLYFVVVV EIACAILAFV 420
  421 PVNQVMLVAI SAVVLLPRQA IFSKQAAFSL ISIALLAVAL LITALLIVHF ALAFSIGILA 480
  481 LPLTFVPTLM KNKSRLTAFC LAVSNPFFVI FVAGKVLGHP ELFDRLVTAW SDIQCWTWFI 540
  541 VVLGWFPAWV IITLSYCGYK PVKEKSE

Type	Start	End	Confidence
Signal Peptide	1	63	0.96
N-region	1	54
H-region	55	60
C-region	61	63
Cleavage Site	63	64
Non-Cytoplasmic	64	372	0.94
Transmembrane Helix	373	399	0.76
Cytoplasmic	400	403	0.53
Transmembrane Helix	404	436	0.72
Non-Cytoplasmic	437	450	0.50
Transmembrane Helix	451	485	0.82
Cytoplasmic	486	495	0.77
Transmembrane Helix	496	517	0.92
Non-Cytoplasmic	518	535	0.90
Transmembrane Helix	536	558	0.92
Cytoplasmic	559	567	0.92