YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1813, orf1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	175	0.98
Transmembrane Helix	176	199	0.87
Cytoplasmic	200	214	0.77
Transmembrane Helix	215	237	0.84
Non-Cytoplasmic	238	370	0.89
Transmembrane Helix	371	392	0.91
Cytoplasmic	393	419	0.92
Transmembrane Helix	420	441	0.91
Non-Cytoplasmic	442	447	0.81
Transmembrane Helix	448	472	0.90
Cytoplasmic	473	509	0.97
Transmembrane Helix	510	530	0.95
Non-Cytoplasmic	531	537	0.85
Transmembrane Helix	538	558	0.91
Cytoplasmic	559	564	0.90
Transmembrane Helix	565	585	0.93
Non-Cytoplasmic	586	602	0.81
Transmembrane Helix	603	627	0.90
Cytoplasmic	628	811	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPSSSSIF ILFSFLLSIV NAGTRYIQSS SLLTCMENSQ FTASFFDIVF YPGNNSVDFN  60
   61 VVAITTIDNK TVGVNVNLIA YGLNVLQRNI SLCDIDYQGI GNTKNNPLCP LMSGHLDLDS 120
  121 SYTLGKSVTK DIPGIAYTIP DLDARVRVIV YDTKNYEQLA CVETTLSNGK TVQTKYAAWP 180
  181 IAAVSGLGVI TSGVISVIGH SSTAAHIASN SMSLFVYFQS LAITAMMAVA RVPPIAAAWA 240
  241 QNFMWSLGIV RVGFVQDIAN WYLQSTGGTP TDILKSSYLS VSVQKFVKKF IRRSVLAMPD 300
  301 QQREFVSHLV KKSSIQLDSD SFGSSGSLDP NLYSTNEKAS DLSGKILVLR GIQRVAYLAH 360
  361 IEITNIFRTG IQFLIFFAFV MIVCLMMFKA IIEILIRSKV MNEGKFNEYR QQWTSIIKGT 420
  421 IYRLLVLALP QISLLCIWEF TANDSAGIII VAVFLLFITL GLLFQAAVRV FFMGKKSVRQ 480
  481 FKNPAYLLFG DGKFLNRFGF LYVQFRADKY WFILVSLVYI LLKSLIVAVL QKSGKPQAVI 540
  541 VWVIELIYLV ILIWIRPFMD KRTNAFNITI GVINFINALF FMFFSNVFKQ PNVVSSVMAV 600
  601 VYFILNAVFA LFLLLFTIIT CVLALLYKNP DTRYQPMKDD RVSFLPRFGN KSGGGDATKG 660
  661 PNSNSEDMEL MALGATAMKG HEHSNQQGGT VFDDYDSYDE DSPDHRSRNA SGPGGAALTT 720
  721 ASSHYDADAD SRRDSINFSE PTQPNSTIVG NPYNAVPPSM GARSTSSNSG FSYGTTGVYT 780
  781 GSVSSPHNQY PNRYGGQQNN YGNNNGARRW Q