YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8810
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADLENQQP QDHHLIIENK GDNSSNHHHH NSTSPYDPHH PITKIETDGD YVTFGNERYL  60
   61 RSDLVEAFGG TLNPGLAPPP KNDFANPAPL GLSAFALTTF VLSLINCEAR GVTIPNIVVG 120
  121 LAFFYGGAAQ LVAGMFELAV GNTFGGVALS SYGGFWGAWA AIQVDSFGIK AAYANNTEEL 180
  181 HYAVGIFLIG WFIFTFFLML LTVKSTVAFF LIFFFLSITF LLLAISDFTG KVAIKKAGGV 240
  241 FGLITAFVAW YNAYAGIANP QNSYITVKAI PLPDLQDPTR KNK

Type	Start	End	Confidence
Non-Cytoplasmic	1	84	0.57
Transmembrane Helix	85	105	0.64
Cytoplasmic	106	111	0.76
Transmembrane Helix	112	134	0.84
Non-Cytoplasmic	135	142	0.60
Transmembrane Helix	143	162	0.80
Cytoplasmic	163	179	0.70
Transmembrane Helix	180	201	0.92
Non-Cytoplasmic	202	206	0.75
Transmembrane Helix	207	226	0.94
Cytoplasmic	227	236	0.67
Transmembrane Helix	237	257	0.86
Non-Cytoplasmic	258	283	0.87