YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1224
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADLENQQP QDHHLIIENK GDNSSNHHHH NNNSTSPYDP HHPITKIETD GDYVTFGNER  60
   61 YLRSDLVEAF GGTLNPGLAP PPKNDFANPA PLGLSAFALT TFVLSLINCE ARGVTIPNIV 120
  121 VGLAFFYGGA AQLVAGMFEL AVGNTFGGVA LSSYGGFWGA WAAIQVDSFG IKAAYANNTE 180
  181 ELHYAVGIFL IGWFIFTFFL MLLTVKSTVA FFLIFFFLSI TFLLLAISDF TGKVAIKKAG 240
  241 GVFGLITAFV AWYNAYAGIA NPQNSYITVK AIPLPDLQDP TRKNK

Type	Start	End	Confidence
Non-Cytoplasmic	1	86	0.56
Transmembrane Helix	87	107	0.63
Cytoplasmic	108	113	0.75
Transmembrane Helix	114	136	0.84
Non-Cytoplasmic	137	144	0.60
Transmembrane Helix	145	164	0.80
Cytoplasmic	165	181	0.70
Transmembrane Helix	182	203	0.92
Non-Cytoplasmic	204	208	0.75
Transmembrane Helix	209	228	0.94
Cytoplasmic	229	238	0.67
Transmembrane Helix	239	259	0.86
Non-Cytoplasmic	260	285	0.87