YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3518
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPKPLPFI YQFVSGAIAG VSEILVMYPL DVVKTRQQLA TTNDYNGTIN CLKKIVREEG  60
   61 FSRLYKGISA PILMEAPKRA TKFAANDEWG KFYRNYFGVT KMNQSLAILT GATAGATESF 120
  121 VVVPFELIKI RLQDKTTKFN GMGEVVKDIV QKNGVLGLYK GLESTLWRHI WWNAGYFGCI 180
  181 HQVRSLMPKP KDSTQKTLID LTCGTVGGTF GTILNTPFDV VKSRIQAGST QYRWTYPSIL 240
  241 KVAREEGFSA LYKGFIPKVL RLGPGGGILL VVFTACMDFF RQYHEK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.57
Transmembrane Helix	9	29	0.66
Non-Cytoplasmic	30	261	0.58
Transmembrane Helix	262	280	0.59
Cytoplasmic	281	286	0.33