YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.1289
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSSSSSLD LHYERPKWYR LAIYDTLLWL LSVIFDCFFR EIRPRGAFKI PREGPVIFVA  60
   61 APHHNQFVDP VLLMNQIKKE ANRRISFLIA AKSYKLKAVG TMAKCQLSIP VVRPQDCLVK 120
  121 GTGKIFVDFD KDPLRVTGKD TKFTKECMVK GLIALPQSLG ASEIVEIISD TELVIRKEFK 180
  181 SSDKVKVLLT NGTAYKRADK IDQKQVYQMV FDHLLDDGCI GIFPEGGSHD RPDLLPLKAG 240
  241 VAVMALGAMD KNPGCNIKIV PCGMNYFNAH KFRSRAVVEF GDPIEIPKEL VKKYANPETN 300
  301 REAVKELLDT ITTGLKAVTV TCEDYETLML IHAVRRLYAG NFAQQLPLPL IVEMNRRLVI 360
  361 GYQHFKNVPK VQEIKEKVLH YNDFLKTLYL PDHDVESCND EAHKITLIPI FFFRVFKLLI 420
  421 LFILALPGAT LFSPVFLSTK IISKKKAKEA LANSVVKIQA NDVVATWKIL VSMGIAPIVY 480
  481 SFYASVGTYY CSTHDYFSHW KLFWVWIFLY SCGVLVTYSA LITGEQGMDL FKSIRPLYLS 540
  541 ITSGSSIKEL KKMRHELSEE ITELVNHYGP QLFPNDFNLL DLQKSLNING DVVYADSDEE 600
  601 EDMKTEELRN RRIARRKAEK KKKQTQENED TQELQSSDMK HSSSMSDGIS LLNSDNSLTN 660
  661 LPMFSDYVLH KNAKNPDLQL DPQSHYGSRV NSNLNSGANS SVSIYDDYRF ASQSEHGGTA 720
  721 SPVRYSRLPH LPETSSSDHM ELNFASKPEG QKMRLRDRIK TKLRENRKEN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle