YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68492362, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYSLSALVS TNPSALSYFD ISFLTFEAVL EVVIICCAGF VAAKTGLLTT QGQKTLSSLN  60
   61 VDLFTPCLIF TKLAPNLSFS KLVEIIIIPI FYAVSTGVSY WSSRIVSKAL SLNSPETDFV 120
  121 TAMAVFGNSN SLPVSLVLTL SYTLPDLLWD DVEDDNTDKV AGRGILYLLI FQQLGQILRW 180
  181 SWGFNTLLRK RSQLELNTYH TKHGKIVLHE NCRLIDGEDE QFLYMDSNQH QEEQQTETTR 240
  241 EISLSEDEDN INSKPLTAYI CQLPGVKQFL SFMNPPLYAM LVAIIVASIP YLKNLIFDSE 300
  301 QNSIVYNTFT KAITTLGGVS IPLILIVFGS NLYPSNDIPP PSKHYNRILF GSLLSRMILP 360
  361 SAVLLPIIAL CVKYIKASIL DDPIFLIVAF ILTVSPPAIQ LSQITQLNNV YQKEMSGVLF 420
  421 WGYVVLVVPT TIAIVVCSLK VLEWAK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.38
Transmembrane Helix	21	43	0.68
Non-Cytoplasmic	44	81	0.53
Transmembrane Helix	82	103	0.66
Cytoplasmic	104	118	0.49
Transmembrane Helix	119	140	0.45
Non-Cytoplasmic	141	275	0.78
Transmembrane Helix	276	297	0.81
Cytoplasmic	298	308	0.80
Transmembrane Helix	309	332	0.84
Non-Cytoplasmic	333	352	0.78
Transmembrane Helix	353	372	0.92
Cytoplasmic	373	382	0.67
Transmembrane Helix	383	401	0.92
Non-Cytoplasmic	402	418	0.79
Transmembrane Helix	419	442	0.89
Cytoplasmic	443	446	0.86