YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50591133, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGLIAQIEK GKPFFEKISR NIYLRAIRDG FIAGMPVILF SSIFILIAYV PNAWGFKWSA  60
   61 DIETLLMTPY NYSMGILGLF VAGTTAKALT DSMNRSLPST NQINFISTML AAIVGFLLMA 120
  121 ANPAKDGGFL TGFMGTKGLL TAFIAAFITV NVYKVCVKNN VTIRMPDEVP PNISQVFKDL 180
  181 IPFTVSVVLL YAIELLVHNA LGVNVAESIG KLLAPLFQAA DGYVGITIIF GAFAFFWFVG 240
  241 IHGPSIVEPA IAAITYANAE ANLQLLQAGE HADKILTSGT QMFIVTMGGT GATLVVPFMF 300
  301 MWLTKSKRNK AIGRASVVPT FFGVNEPILF GAPLVLNPIF FIPFILTPIV NVWIFKFFID 360
  361 SLGMNSFTAN LPWTTPAPLG LVLGTNFQVL SFILAAVLIV VDVAIYYPFL KVYDQQILEE 420
  421 ERTGKSSDEL KEKVAANFNT AKADAILEKA GATETVESTV ESKEITEQTN VLVLCAGGGT 480
  481 SGLLANALTK AAKEYGAPVT AAAGSYGGHR EILPQYQLVI LAPQVASNYE DLKVETDKLG 540
  541 IKLAKTEGAQ YIKLTRDGQG ALDFVKQQME N

Type	Start	End	Confidence
Cytoplasmic	1	29	0.95
Transmembrane Helix	30	50	0.95
Non-Cytoplasmic	51	69	0.86
Transmembrane Helix	70	90	0.88
Cytoplasmic	91	102	0.85
Transmembrane Helix	103	121	0.96
Non-Cytoplasmic	122	132	0.80
Transmembrane Helix	133	155	0.78
Cytoplasmic	156	218	0.74
Transmembrane Helix	219	241	0.87
Non-Cytoplasmic	242	281	0.77
Transmembrane Helix	282	303	0.92
Cytoplasmic	304	322	0.63
Transmembrane Helix	323	357	0.69
Non-Cytoplasmic	358	378	0.43
Transmembrane Helix	379	410	0.71
Cytoplasmic	411	571	0.60