YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|223897625, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.98
Transmembrane Helix	109	130	0.90
Non-Cytoplasmic	131	150	0.88
Transmembrane Helix	151	174	0.85
Cytoplasmic	175	181	0.78
Transmembrane Helix	182	203	0.83
Non-Cytoplasmic	204	219	0.85
Transmembrane Helix	220	241	0.77
Cytoplasmic	242	250	0.75
Transmembrane Helix	251	275	0.84
Non-Cytoplasmic	276	291	0.67
Transmembrane Helix	292	313	0.81
Cytoplasmic	314	336	0.65
Transmembrane Helix	337	359	0.82
Non-Cytoplasmic	360	366	0.61
Transmembrane Helix	367	388	0.80
Cytoplasmic	389	395	0.60
Transmembrane Helix	396	426	0.76
Non-Cytoplasmic	427	435	0.59
Transmembrane Helix	436	457	0.86
Cytoplasmic	458	648	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKKVSAEV IEAVGKDNLV AAAHCATRLR LVLKDESKVN QKALDDNADV KGTFSTNGQY  60
   61 QVIIGPGDVN FVYAELIKAT GLKEVSTDDL KQIAAQDKKF NPLMDLIKLL SDIFVPIIPA 120
  121 LVAGGLLMAL RNFLTSPDLF GPKSIEEMYP AIQGISAMIQ LMSAAPFMFL PVLVGISAAK 180
  181 RFGANQFLGA AIGMIMTTPD LGGKEAFWDI FGFQVAQTNY AYQVIPVLAA VWLLATLEKF 240
  241 FHKKLPSAVD FTFTPLLSVM ITGFLTFTVI GPVMLTVSDA ITNAIVWLYD TTGALGMSIF 300
  301 GGTYSLIVMT GLHQSFPAIE TQLLSAYNNN GTGYGDYIFV VASMANVAQG AATLAIYFLT 360
  361 KNAKTKGLSG SAAVSAFLGI TEPALFGVNL KYRFPFFCAL AGSAIGALFA GLTHVIAVSL 420
  421 GAAGFIGFLS IKASSIPMYV VAEVIAFAAA FASTYVYGKT KASAVFADEA ATAAAAAVTA 480
  481 SVVETSEEVE ETAEIFTAQE TLVSPLSGDV VALENVNDPV FSSGAMGKGL AVKPSEGVVY 540
  541 APADAEVTIA FETGHAYGLK TASGAELLIH IGIDTVSMNG NGFEKLVAAG DKVKAGTPIA 600
  601 KFDATKIAEA GLDDTTMIIV TNTADFAEVS PLAEGTIAHG VEFLKVAK