YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27529495, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.92
Transmembrane Helix	64	79	0.80
Non-Cytoplasmic	80	95	0.69
Transmembrane Helix	96	117	0.89
Cytoplasmic	118	140	0.71
Transmembrane Helix	141	156	0.73
Non-Cytoplasmic	157	173	0.61
Transmembrane Helix	174	193	0.92
Cytoplasmic	194	202	0.78
Transmembrane Helix	203	222	0.92
Non-Cytoplasmic	223	249	0.86
Transmembrane Helix	250	270	0.79
Cytoplasmic	271	288	0.93
Transmembrane Helix	289	312	0.87
Non-Cytoplasmic	313	363	0.83
Transmembrane Helix	364	386	0.72
Cytoplasmic	387	405	0.89
Transmembrane Helix	406	424	0.93
Non-Cytoplasmic	425	440	0.79
Transmembrane Helix	441	460	0.85
Cytoplasmic	461	468	0.79
Transmembrane Helix	469	491	0.90
Non-Cytoplasmic	492	499	0.71
Transmembrane Helix	500	522	0.84
Cytoplasmic	523	554	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPEQDGDLL DGGSHQENGV QTNQYSSISP PGSPVGQEEP FSTYFEEKVP IPENTSEVFS  60
   61 FRKLWAFTGP GFLMSIAYLD PGNIESDLQS GAKAGFKLLW VLLGATIIGL LLQRLAARLG 120
  121 VVTGMHLAEV CHRQYPTVPR IILWLMVELA IIGSDMQEVI GCAIAFNLLS AGRIPLYAGV 180
  181 LITITDTFVF LFLDKYGLRK LEAFFGFLIT VMAISFGYEY VVVKPNQGEL LKGMFLPYCE 240
  241 GCGPNELEQA VGIVGAVIMP HNIYLHSALV KSRDINRNNK KEVKEANKYY FIESSVALFI 300
  301 SFLVNVFVVA VFAQAFYQKT NDKVHEFCNI TSGPYANLFP NNNDTLQVDI YKGGVVLGCF 360
  361 FGPAALYIWA IGVLAAGQSS TMTGTYSGQF VMEGFLDLHW SRFSRVLLTR SIAITPTLLV 420
  421 AIFQDVEHLT GMNDFLNVLQ SMQLPFALIP ILTFTSLKSI MNGFENSLVW KISGGIVILV 480
  481 VCAINMYFVV VYVTALKNVL LYVLAALFSV AYLGFVGYLA WHCLVALGVS CLDCGGRVRN 540
  541 QAAVLTEEPS EYDS