YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54648231, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	288	0.99
Transmembrane Helix	289	311	0.91
Cytoplasmic	312	352	0.95
Transmembrane Helix	353	376	0.91
Non-Cytoplasmic	377	384	0.79
Transmembrane Helix	385	406	0.92
Cytoplasmic	407	421	0.84
Transmembrane Helix	422	444	0.89
Non-Cytoplasmic	445	456	0.77
Transmembrane Helix	457	481	0.86
Cytoplasmic	482	508	0.96
Transmembrane Helix	509	530	0.89
Non-Cytoplasmic	531	543	0.75
Transmembrane Helix	544	567	0.91
Cytoplasmic	568	577	0.82
Transmembrane Helix	578	600	0.88
Non-Cytoplasmic	601	616	0.88
Transmembrane Helix	617	641	0.89
Cytoplasmic	642	651	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIQSSTVIF TSLLLCVIRP GAAFYLPGLA PVSFCEQGKE TAECKSEIEL FVNRLDSVES  60
   61 VLPYEYAAFD FCQNTGEKRP SENLGQVLFG ERIEPSPYKF TFNKEAKCQL VCKKTYSSSN 120
  121 QETKSKLDFL KKSMLLNYQH HWIVDNMPVT WCYDVEDGQR FCNPGFPIGC YITENGHPKD 180
  181 ACVINSEFHE KDTYYIFNHV DITIFYHVVE NEGQGARLVA AKLEPKSFKQ THVDQPDCSG 240
  241 PPMEIKNQFS GDVTVPYTYS VSFHEEKNIR WASRWDYILE SMPHTHIQWF SIMNSLVIVL 300
  301 FLSGMVAMIM LRTLHKDIAR YNQMDSTEDA QEEFGWKLVH GDIFRAPRKG MLLSVFLGSG 360
  361 AQILIMTFVT LFFACLGFLS PANRGALMTC AVVLWVLLGT PAGYVASRFY KSFGGEKWKT 420
  421 NVLLTALLCP GIVFADFFLM NLILWGEGSS AAIPFGTLVA VLALWFCISV PLTFIGAYFG 480
  481 FKKQAIEHPV RTNQIPRQIP DQSFYTKPLP GIIMGGILPF GCIFIQLFFI LNSIWSHQMY 540
  541 YMFGFLFLVF IILVITCSEA TILLCYFHLC AEDYHWQWRS FLTSGFTAVY FLVYAVHYFF 600
  601 SKLQITGTAS TILYFGYTMI MVLIFFLFTG TIGFFACFWF VTKIYSVVKV D