YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50260260, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	110	0.99
Transmembrane Helix	111	134	0.88
Non-Cytoplasmic	135	146	0.90
Transmembrane Helix	147	169	0.89
Cytoplasmic	170	177	0.82
Transmembrane Helix	178	196	0.93
Non-Cytoplasmic	197	206	0.69
Transmembrane Helix	207	228	0.91
Cytoplasmic	229	237	0.90
Transmembrane Helix	238	259	0.93
Non-Cytoplasmic	260	268	0.86
Transmembrane Helix	269	288	0.94
Cytoplasmic	289	326	0.87
Transmembrane Helix	327	349	0.84
Non-Cytoplasmic	350	361	0.75
Transmembrane Helix	362	383	0.87
Cytoplasmic	384	408	0.91
Transmembrane Helix	409	429	0.94
Non-Cytoplasmic	430	439	0.78
Transmembrane Helix	440	461	0.91
Cytoplasmic	462	476	0.86
Transmembrane Helix	477	495	0.91
Non-Cytoplasmic	496	501	0.57
Transmembrane Helix	502	525	0.85
Cytoplasmic	526	630	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTASSSSST PMELSTPSVT LTHDRMEEQN SSSETLGPDS SPSISCSNME EIALDKKNLR  60
   61 GKPPDKEGDG SCAKFLVDTP QSDKEGVSEV ETIDGRPKDV YDRFSKRQKN VIVAVISYSA 120
  121 FIAPMTSSIF LPSIPTMAVD LHSSAEVINY TVAIFLVTIG VASVFWSPYS GFYGRRPVYL 180
  181 ASMPIMVIAS IGVAQSKNIG AIIGTRILQG IGSSCVLSVG AGTIGDIFRP TERSRGMATY 240
  241 YMGVLIGPAL SPILGGIFTE YTSQTWRSAQ YFLAGCGALS VVLTFFFLPE TFHPPTVHER 300
  301 LKKERGKKFV MYWVNPFRSV MLLRWPNIAM ACFISSCVML DTYCVIVPLS AVFKDRYNIH 360
  361 NTAIAGCLFL VNGAGNIISS RIAGPYADRI VKKYMGKRGY RRPEDRLKAS FWGTLILMPI 420
  421 SVLIYGWLLK FGKGGMAPPL IMVFLNGISL MLCLTPLNTY LVDCMQSRSA EVVAINNCIR 480
  481 YIFSAAASAF VLPLANAIGW GWTMTMCAFV SWLAAGSLFI LCRYGERWRE AANIRYGITE 540
  541 VEAQEERVDG GKDEEAAVVE NNTIEDRRAS DGYGEYLEGP VPMEKNFSRT KSRTKTVDRQ 600
  601 ISRKEGELPL VEEVLKRQVS FSGPSIHGGG