YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPN3_CRYNJ
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.52
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYAVLVTGP AGAGKSTFCA SLITHAQTIG RSVHLVNLDP AADKFEYEPT IDIRDLINLE  60
   61 DVMEELEFGP NGGLIYCFEY LLNNLDWLED ELGAYEDDYL IIDCPGQIEL YTHVPLLPRL 120
  121 ATFLSTSLNF RTSAVYLIDS QFMQDKSKFF AGVMSAMSCM LSLGISMLCL MSKMDLVKDK 180
  181 KGRTKREVGR YLDPDPNLLL EDINQGTNSK FNQLNRAVVS LIEDQNIVSF LPLDVTSEDS 240
  241 VNTVLSHIDN MMQYGEDEEP KVPKDMDDGE FVAPPRSYNI KLIVRDR

Type	Start	End	Confidence
Signal Peptide	1	19	0.59
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	149	0.86
Transmembrane Helix	150	171	0.86
Cytoplasmic	172	287	0.86