YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57226657, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHRGQPLF SGGMYELLNK GAAEHEEVEE EEEAPVETSP ENPSGSQSQT ATLSKSARKR  60
   61 LARQASKGLD GKSKSNKQSG SETESPGTPS VPGAEEFPET NIEAPIPQEA PKQQASSPAK 120
  121 TELEHSTTSP SQIPALEKQI PDIAPKKTKP VTAVPEKKEE NKEQKKETPK KADAARSSSP 180
  181 PSSNFSPSLP ATLPQPTGNA LPANRKRKTP QDFTPAGPGN VMNSASPSKI AVKFEDGLAP 240
  241 GEGKEGEKTI APKKNRNMIE RTIWTFIMIG GFIVLLCMGH PYMILLVMLC QTLVYNEVTA 300
  301 LFDLRDHGGS KAATPGEQGD SWNKTINWYF FVVANYFLYG ESIIYYFKHI VFVDAYFIPF 360
  361 ARNHRFISFM LYVVGFVGFV ANLQRQYLRQ QFALFCWVHI SLLLIVVSSH FIVNNILEGL 420
  421 VWFFVPASLV ICNDVMAYVC GKLFGKTPLI KLSPKKTVEG FVGAFICTLL FGIAWGTFWM 480
  481 RYPYMICPAR DLGTNVFSQV TCRPNPVFMW HSFEFTGVAR QALQTILGHP PPSIPYAPFQ 540
  541 IHCLVMATFA SLVAPFGGFF ASGFKRAFNI KDFGHSIPGH GGMTDRMDCQ FMMGLFSYVY 600
  601 YSSLIRIQNV TVGGIMQAVV TSLTQPEQIE LLYDLKRFLA GQGVKV

Type	Start	End	Confidence
Cytoplasmic	1	261	0.82
Transmembrane Helix	262	284	0.91
Non-Cytoplasmic	285	363	0.73
Transmembrane Helix	364	383	0.89
Cytoplasmic	384	392	0.83
Transmembrane Helix	393	413	0.94
Non-Cytoplasmic	414	419	0.87
Transmembrane Helix	420	441	0.91
Cytoplasmic	442	457	0.88
Transmembrane Helix	458	479	0.90
Non-Cytoplasmic	480	537	0.96
Transmembrane Helix	538	561	0.89
Cytoplasmic	562	646	0.84