YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134089961, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.68
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	34	0.80
Transmembrane Helix	35	54	0.92
Cytoplasmic	55	78	0.85
Transmembrane Helix	79	100	0.90
Non-Cytoplasmic	101	105	0.67
Transmembrane Helix	106	126	0.91
Cytoplasmic	127	132	0.78
Transmembrane Helix	133	153	0.94
Non-Cytoplasmic	154	172	0.82
Transmembrane Helix	173	193	0.95
Cytoplasmic	194	203	0.78
Transmembrane Helix	204	227	0.85
Non-Cytoplasmic	228	238	0.79
Transmembrane Helix	239	259	0.93
Cytoplasmic	260	270	0.70
Transmembrane Helix	271	291	0.92
Non-Cytoplasmic	292	297	0.72
Transmembrane Helix	298	320	0.90
Cytoplasmic	321	730	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSISASST TSATASASTS AAGIVDSSSN SVFKLVGICL AVGSGLLIGT SFVIKKKGLI  60
   61 NSTEKYGNQA GEGHGYLKSW IWWAGMLTMI VGEICNFVAY AFTEAILVTP MGALSVVVAA 120
  121 ILSHFMLKEK LTFFGWIGCT LCIMGAVIIA LNAPEEQSVT TINEFKKMFL SVGFLVWASL 180
  181 SIAASLVVVF FVAPKYGKKN MMPYISICSL IGGISVSCTQ GLGASILTSI QGDNQVKNWF 240
  241 FWFLFVFVIV TLLTEINYLN KALELFNTSM VVPVYFCFFT SATLITSFIL YKGLKASAVT 300
  301 LITMVLGFLV TCLGITLLQL SKVNPKELAN KLDRKSTILM EASRHQTEDA EKGQVSSYED 360
  361 PGMDALRGGF GAVGSIIRAR SVNRRMSNAS TLNGGKYGAA NLSTHGLEHL PRFQLSDNPM 420
  421 PSDAMSQISL HSAKSPTILS GKSFRSPHDQ YPSPQRSKSI KFEEGDIVHQ YHYNQGPDQD 480
  481 AMHTYLPFSA DHHNGYRHSS GPMYPPVMEE DEDAYEKEVE ANRENGSSRT KVHVDGASEE 540
  541 VLAEPLSYND PYAIYPARAN VPQIARQSGT NKGLSGLFSF QSGPDLSLHI PHINRNRDSS 600
  601 NEKSPRREHH DYPTLSKKDR NNAQEREERQ ALVGGDDDES GGRHRSDSNV SSSLSVSDGE 660
  661 TRESEQPQSA VSTQATIGMC TRVQIGQGSP ARQGAFTSNG TSGAVPERRN SPRKLPDLPG 720
  721 FAAGSPYGSS