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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50256931, gi|...
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDRRQPPIA IPPAPLLSAS VSTPRRPTPQ REQEPSDDTV RRVPSSYFSL PYSYSSPAGP  60
   61 SHWRNKPLDS GSARRRDGKF RSASVKTVGS FSLKTPNRHE DLDNWQSLQD ITGSDVDEDQ 120
  121 IEDKATTNSR SSSLATPSAR SVRSLFISSD LSADALSIPE GRSHTSDRIS IVDRLSLSPT 180
  181 QLEAGGDHIL SVSRDDSQEE EGTPRAAVLP LQSPEPIERL TSATPLLEAS FPSDFLSPRQ 240
  241 PITETRSIVE KKASTLEGHR YSWIPPTWAT NILKCSIAYL IASLFTFVPA LASMLSTQSE 300
  301 TDAHGRVTAV PAYSAHMVAT IVVYFNPAKT LGNMLLSTRY CFVLAVLSTV VSLLATLTIR 360
  361 LFDHYSPSHG ERWDFISEMG DWIVCIIWIG GTMGVLAWSK LWVGNPSFNS GCSMAAMILY 420
  421 NVVIKEGAVP KLIEILLIVF TGVCITNLVC ITVVPVSATS NLQKSISKSL NSFSTLLDLL 480
  481 TSTFLLEKST VKEKGLTLKD AVRDHSAAFK TLQKDLSEAK HERVLDGRIR GRNLQLYDAA 540
  541 IVSLGRLAQH LSSLRSSTRL QESLVRASRE GRISLEVGAE RGRSKISISE VDAIDDERGQ 600
  601 GLSEDMDIAT SVHLFLKFRE IAGTQMDDLN TRCDQALEAV QALSQARQMP CIDLPLIRSK 660
  661 LATSLKEFTL SSSRAIKRVY AGPRRKKGVY FKTDPSSSDS GESESDVESE KIYGNGNECK 720
  721 LEATEDLPVE DQPDINHGPN ETVFWIYFFL FTFEEFAREM IFLVDTMEEI VTTEKVTFWE 780
  781 HLKTVIMPKR GRKEKKSEYL YKQLQNIVPI DPSQLQPPLY PKNGRDSTGP VIVPDLKSLS 840
  841 FIGRIKQMFW ALGERSKQPD ARYAIKTGLG GAMLAAPAFT EIGRPIFLRF RGEWALIAYF 900
  901 ATMSQTIGQT NFLSMMRILG TLIGAGAAVL FTKLFPDNNV ALPILGFFFS IPCFYIITQM 960
  961 PDYMNAGRFI LLTYNLTCLY TYNTRTRGDV TVEMIAYRRS TSVIVGVLWA AIVSRYWWPF1020
 1021 TARRELRMGL SDFCLDLSYL YSKLLTTYGN GVDYNGLNAV GADTEEGELE PLLPTDAIRH1080
 1081 SHLDHGVRQF MAMELHLQSQ LDSMKSLLAH TKNEPRLKGP FAYGFYKEVL LSCERMLDRL1140
 1141 HSMRCVTTRD EWDNNIRDTF VIPVNKERRE MAGNVILYFY TLSAGFRLRT PVPPYLPPAE1200
 1201 EARQRLVDAI RSLDVVRRRS VRGGGRHLLF FAYTLAMQEV IAELEYLGAM MQEAFGVISV1260
 1261 SSADDFEDLF EEPVEEAAKV GESPKSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle