YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50256832, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.98
Transmembrane Helix	96	115	0.89
Non-Cytoplasmic	116	139	0.87
Transmembrane Helix	140	160	0.95
Cytoplasmic	161	166	0.95
Transmembrane Helix	167	189	0.89
Non-Cytoplasmic	190	194	0.76
Transmembrane Helix	195	215	0.93
Cytoplasmic	216	225	0.86
Transmembrane Helix	226	248	0.89
Non-Cytoplasmic	249	254	0.86
Transmembrane Helix	255	276	0.87
Cytoplasmic	277	346	0.97
Transmembrane Helix	347	367	0.86
Non-Cytoplasmic	368	381	0.73
Transmembrane Helix	382	404	0.88
Cytoplasmic	405	411	0.91
Transmembrane Helix	412	434	0.91
Non-Cytoplasmic	435	453	0.94
Transmembrane Helix	454	477	0.91
Cytoplasmic	478	487	0.89
Transmembrane Helix	488	510	0.89
Non-Cytoplasmic	511	520	0.81
Transmembrane Helix	521	540	0.91
Cytoplasmic	541	611	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENPSGPPKV PAEANREIIV CINTQVSQTE PSSLATYAKQ IKMNSDEIAP VATLSSSSLP  60
   61 PSEMKAEATS SGLTHEGQLI DEAVIQAENE DKMTPYLVFL IGSAALGGFL YGYDTGVVGI 120
  121 ALPYVGTDLG HALSSPEQEI ATAATTIGAI FGAAILGYFA DKWGRKWCLL ISDLFFTAGA 180
  181 IIIASSFSLG QLTAGRLVLG VGVGGAAIIC PLYITELAPT AVRGRCVGTN GFFIPFGQTV 240
  241 SVAIGAGLKD VKYNWRILFG LGVVPSLLQL CLMHKLPESP RVLILRGQDD RAREVLKQIY 300
  301 RYASHEVIEL KLEIVKAHVQ ATTVLERSTT WAQRAKKLWC HKPYRRSILT VCMIQVFGQF 360
  361 TGYNTLLYYA GTLFGLVGLS NASLGGLIPS ITNTFFLLVG MLFVDRIGRR GLLMKFGPLM 420
  421 IIGLIWCLIA FYFMCKETGG FLVEGFVYNQ RDVGLVIAGI VIFVMGFGST YAHICWYQSE 480
  481 YLALEIRAIG SAISTTASFS ANLVVAVSFL SELETLTPSG TYGLYLGFVV IGYVLAYYCY 540
  541 PETKGLSIDE AFSLFDDDFG VKKSVKMRRE KAEAQKRYNA EGGESGQVVD YLGAKPETSH 600
  601 IERVEPVASG L