YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134115721, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYEATASAP VNIACIKYWG KRDTRLILPT NSSLSVTLDQ DHLRSTTTSR ADASFEAGDK  60
   61 LWLNGKEEVI KEGGRLAVCI KELRRWRKEM ESKDKDLPKL SEWPLRIASY NNFPTAAGLA 120
  121 SSASGLAALV ASLASLYSLP QSPSQLSLVA RQGSGSACRS LFGGFVAWRE GTDPAGSDSL 180
  181 AEEVAPREHW PEMHALICVV SDAKKGTSST SGMQKTVETS TLLQERLRIV PKRMDAISQA 240
  241 IKARDFSEFA KLTMADSNSF HAVCLDTAPP IFYLNDVSRA IIAVVEELNR AAGEIIAAYT 300
  301 FDAGPNAVIY TLEKNMPVVL GAIKRFFPTG EEFEDPFQTG VRDLPEGFNT GVVREGGWEK 360
  361 GAVKGLIHTR VGDGPRVLKN EESLLGENGV PKVLA

Type	Start	End	Confidence
Cytoplasmic	1	114	0.88
Transmembrane Helix	115	137	0.83
Non-Cytoplasmic	138	395	0.98