YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134115931, gi...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISWLLKPV ALVSTVALST LGVLSRRYQR ARFYFNLTIY VSTLGLMSVW GVVVSILATA  60
   61 AGQRLNINYY VARSLYGLSG PLLGIKFEVE GEEHLEGLMT ARDGQHQGAV LLSNHQSFLD 120
  121 ILYIGRIFPK QAAIMAKKEL KWTPLLGQFM SLSGAVFVNR KNRHDAVKAL AIAGEDMKKK 180
  181 GVSLWIFPEG TRSSSPEPTL LPFKKGAFHL AVQAQIPIVP IVCENYHRLF DGRTRFESGV 240
  241 LKIRVLPPIP TTGLTVDDVT SLAESTRESM LHALREISEP GPSSSTPIPT SAEVPLAPPI 300
  301 SRNTTQPPAG DSIQLDISES GALRQRGVHS SGVSSEWSEG KFEAQSEETT EDEMDEDVVL 360
  361 LKKPKENVA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.61
Transmembrane Helix	6	25	0.67
Cytoplasmic	26	36	0.59
Transmembrane Helix	37	58	0.73
Non-Cytoplasmic	59	369	0.90