YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134091324, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLPRLLIS STSLATVVGL YLLFTGQGEA FNVGNFLAES SPYAWALVGV GLCIGLSVSG  60
   61 AAWGIFVTGA SILGGGVRAP RIRTKNLISI IFCEVVAIYG VIMAIVFSSK INGDVPNIYT 120
  121 ANNYYTGFAL FWGGLAVGVC NLLCGVSVGI TGSTAAVADA ADPQLFVKIL IVEIFGSVLG 180
  181 LFGLIVGLLI VSRPPTLSRH PLTQRAVRQG RRVCVNLDNV ITMHYYFDMS TSAAWRCSSP 240
  241 WLRTPGFLSA CWW

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	25	0.90
Non-Cytoplasmic	26	43	0.85
Transmembrane Helix	44	67	0.93
Cytoplasmic	68	86	0.80
Transmembrane Helix	87	107	0.96
Non-Cytoplasmic	108	127	0.91
Transmembrane Helix	128	152	0.88
Cytoplasmic	153	168	0.80
Transmembrane Helix	169	191	0.93
Non-Cytoplasmic	192	253	0.97