YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58270340, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGAFGSAA PPLVVAGHDD GYPSDILSCI HPSLTFIRSR PIAPDLSLFI LSKSISILHS  60
   61 ASTMNILDTL FGRSMTPAER LRQHQRSLQK AQRELEREKG KLEAQEKKTM ADIKRNAKAG 120
  121 NMNACKILAK DLVRTRRYIQ KFTQMRVQLQ AVSLRMQTLR SNEQMATAMK GATRAMGQMN 180
  181 RSLNLPQIQK IMNDFERESS TMDMKEEMMS DAVDDAMEDE EEGEGEEVES DKILKEVLDE 240
  241 IGMNMNESLI SAPTASPLVP EPLQASRVAV AEGLPSSAAA GGPTNVGNGG VGAGSGMSSE 300
  301 EADLQRRLDA LRRD

Type	Start	End	Confidence
Signal Peptide	1	16	0.67
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	314	0.99