YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53733883, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSAHLDML DENTDSFRGW ETFVWHGFHL EDWKRHGVIN RIAYFEVEIL DPKSKAQLCY  60
   61 LDKVVPSATI AEIKGLFHKT YPKLYPSRQA LKLHPEGKAL NDEDVLEDLP VGTTATMFFQ 120
  121 DLGPQIGWTM VFLAECLGPL FVYLLFYFRL PYIYRHEYDY IRSPLKVVRL ACWCHCLHYI 180
  181 KKLVETIFIH RFSDGTVPLR TIMLLCLYYW GFASWQAYYI NHPLYTPATY GRLQIYSALA 240
  241 LFLLCEFGNL SVHLILNRIS CNGSKPTEIP YPTNNPFTWL FFFVSCPNYT YEVGSWISFA 300
  301 VMTQCVPVGV FAFLSFIQMT IWARAKHKTY VKEFKDYPEL RTAIIPLFF

Type	Start	End	Confidence
Non-Cytoplasmic	1	125	0.81
Transmembrane Helix	126	147	0.90
Cytoplasmic	148	196	0.85
Transmembrane Helix	197	219	0.83
Non-Cytoplasmic	220	234	0.84
Transmembrane Helix	235	256	0.89
Cytoplasmic	257	272	0.79
Transmembrane Helix	273	291	0.78
Non-Cytoplasmic	292	299	0.64
Transmembrane Helix	300	322	0.87
Cytoplasmic	323	349	0.96