YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53733861, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISACLEIVG LCLTVTGTLL VMVACGLPMW KVSAFIEGNI VVAQNIWDGL WMSCVVQSTG  60
   61 QMQCKMHDSV LALTTDLQTA RALTVISAVL GVLALMITIA GAQCTNCINT ESIKSKVVNA 120
  121 GGVMYIVAGL FVLIPLCWMA NNIISDFYDP QVPYAKKREI GAALYIGWAA SAMLLVGGAI 180
  181 LCFSRPHDEK STYPLKYIPP PTKGTSINGD YDKRNYV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	30	0.90
Non-Cytoplasmic	31	81	0.88
Transmembrane Helix	82	102	0.91
Cytoplasmic	103	116	0.77
Transmembrane Helix	117	140	0.86
Non-Cytoplasmic	141	161	0.83
Transmembrane Helix	162	183	0.93
Cytoplasmic	184	217	0.90