YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	psd-1
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIYSGGFL HPDSLMALNP FLIFVAFWSW VKWLSVSTLI IGGASYVGYL FTPDWREIVD  60
   61 SKHYYSNWKI RVYLSLPFNT ASRVIGGLAN QEIPVWLREH LLGGFARMYD CRMDDCVDPD 120
  121 FKNYPSFAAF FNRKLKESTR PISASPLVSP ADGTVLHFGK VEDNKIEYVK GHDYDVDKFL 180
  181 GDVDLPQKDE LDLYQVVIYL APGDYHAFHS PARWVANQCR HVPGLLLSVR PTLLSHVPHL 240
  241 FCLNERVVLN GSWRHGFFSM SAVAATNVGD IVVDAEPSLR TNIVRRKTQK IMNTETEIHA 300
  301 PYVSGERVGE FRLGSTIVLV FQAPPTIKFA IKAGDPLRYG QSLVADGV

Type	Start	End	Confidence
Cytoplasmic	1	14	0.42
Transmembrane Helix	15	49	0.64
Non-Cytoplasmic	50	348	0.58