YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37715
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLTLALLV AGSLAYKFED CEQKPAALNQ VLRVGAKLYS YNLDFFYQKA LPYNAIYAFT  60
   61 DVFLQTNLTN ADQYQFYQGT NCTTVQQLYD NDNRYFGILR KAALLRSHQL NPFNDTIVGV 120
  121 STTEPYEISV LIWKVNYFRV GVYVGAIVLF LLASKLVRNV VFYYTSGCSF GLLASLLLVA 180
  181 FIVWRVAPKK TIGVPILIGG WSVSLYMLHF AWSNLQSIMI EYQKYVIGYF ATVLLISMAV 240
  241 CYKRGPPTDA RSHDIAQWTL QLVALALIYF SVQMVEVSTG TIGALIIQQI CRGFLFAGIR 300
  301 WYFVGLKAVW RKFFPARRRL LNEEEYEEQA EKTTKEQLAQ LREYCKKEGN RPWKIAGNVR 360
  361 SARRLARFIE GEDDHITEDE IYAHELTGDV LDDEDYDFNE DYGLRTPNES HFDLEDDEDG 420
  421 AEEWDEVVVR RRASEYGRDS VQSVRVPRSV SSRLLSPYQG QNHMNRSLGP GIGFRRDSTP 480
  481 RHGNFQSEHR PRMPRTEQIY RSRRVEYDVK NGRVEGPSSS TASGMTPSEY MRKARRIDAT 540
  541 SKTPTRKSRH PTESEDADE

Type	Start	End	Confidence
Signal Peptide	1	15	0.78
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	159	0.76
Transmembrane Helix	160	184	0.91
Cytoplasmic	185	191	0.82
Transmembrane Helix	192	212	0.93
Non-Cytoplasmic	213	224	0.81
Transmembrane Helix	225	242	0.95
Cytoplasmic	243	254	0.78
Transmembrane Helix	255	275	0.84
Non-Cytoplasmic	276	284	0.61
Transmembrane Helix	285	304	0.83
Cytoplasmic	305	559	0.89