YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37573
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.82
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	37	0.81
Transmembrane Helix	38	57	0.87
Non-Cytoplasmic	58	95	0.82
Transmembrane Helix	96	115	0.73
Cytoplasmic	116	130	0.65
Transmembrane Helix	131	153	0.89
Non-Cytoplasmic	154	183	0.86
Transmembrane Helix	184	203	0.94
Cytoplasmic	204	219	0.87
Transmembrane Helix	220	241	0.86
Non-Cytoplasmic	242	254	0.74
Transmembrane Helix	255	274	0.60
Cytoplasmic	275	294	0.43
Transmembrane Helix	295	309	0.27
Non-Cytoplasmic	310	319	0.58
Transmembrane Helix	320	343	0.59
Cytoplasmic	344	360	0.66
Transmembrane Helix	361	383	0.91
Non-Cytoplasmic	384	411	0.91
Transmembrane Helix	412	432	0.93
Cytoplasmic	433	447	0.87
Transmembrane Helix	448	469	0.94
Non-Cytoplasmic	470	484	0.83
Transmembrane Helix	485	505	0.85
Cytoplasmic	506	520	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFNLKFIL AFGYCSISFV IYTLLIIMLL KNWKDFKSAF FHIVIADYFF NLLTWLNSMI  60
   61 TLRLPNGTCK DCVLSNLFAS LGKDNQYTSS FLFFCYFLHF GNAYFQYFMV TLMAVNRTTS 120
  121 IFFYFVNEKI WSILFPLSLG AVILVEVFFT RTILSTKPYF VFNEALDMYS IKSDSDILSA 180
  181 YSNVIIFMGF CVICSIVCNF LSIMQLKLMK KNLSTIERNL LFSTLASSVI QCAAAGNTFL 240
  241 LQFDRNAIYG QIGQLLLPFF SDFLTISQPY ILILMSSKNL LTWLNSMITL RIPNGTCKDC 300
  301 VLSNLFASLG KDNQYTSSFL FFCYFLHFGN AYFQYFMVTL MSLNRTTSIF FYFVNEKIWK 360
  361 FLFPFSIVLI IGITTFCART ILATSPYYLY NEVLDMYYIK SDSNILPAYY NILYFMAFSV 420
  421 ASSIFLNVIA VIRLKMIQNQ ISSVERNLLL VTIFSSIIQC FAAANTFILQ IDVQRATILG 480
  481 QAAQIMLPFA SDFLTISQPY ILLFVSSKVR KNLRFLGFFN