YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54299335
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPTGQVAEK QACEEPRQDR ELKSWRWLVF YLCFFGFMAQ LRPGESFITP YLLERNFTKE  60
   61 QVTNEIIPML PYSHLAVLVP IFLLTDYLRY KPVLVLQCLS FVCVWLLLLL GTSVVHMQLM 120
  121 EVFYSITMAA RIAYSSYIFS LVQPSRYQRM ASYSRAAVLL GVFISSVLGQ VLVTLGGIST 180
  181 YMLNCISLGF ILFSLSLSLF LKRPKRSLFF NRSALVQGAL PCELDQMHPG PGRPEPRKLE 240
  241 RMLGTCRDSF LVRMLSELVK NVRQPQLRLW CLWWVFNSAG YYLITYYVHV LWKITDSRLN 300
  301 YNGAVDAAST LLNPGHLGLL CDLRAFPWGL PVPCAHCHFS DCIFPV

Type	Start	End	Confidence
Cytoplasmic	1	26	0.94
Transmembrane Helix	27	44	0.92
Non-Cytoplasmic	45	65	0.93
Transmembrane Helix	66	85	0.87
Cytoplasmic	86	92	0.74
Transmembrane Helix	93	115	0.89
Non-Cytoplasmic	116	121	0.77
Transmembrane Helix	122	142	0.90
Cytoplasmic	143	152	0.84
Transmembrane Helix	153	173	0.92
Non-Cytoplasmic	174	179	0.72
Transmembrane Helix	180	201	0.92
Cytoplasmic	202	269	0.98
Transmembrane Helix	270	290	0.83
Non-Cytoplasmic	291	346	0.74