YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYB_ORYAF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.52
Transmembrane Helix	29	56	0.80
Cytoplasmic	57	76	0.57
Transmembrane Helix	77	101	0.80
Non-Cytoplasmic	102	111	0.52
Transmembrane Helix	112	133	0.90
Cytoplasmic	134	139	0.48
Transmembrane Helix	140	161	0.75
Non-Cytoplasmic	162	177	0.65
Transmembrane Helix	178	200	0.92
Cytoplasmic	201	225	0.69
Transmembrane Helix	226	246	0.87
Non-Cytoplasmic	247	287	0.72
Transmembrane Helix	288	308	0.92
Cytoplasmic	309	319	0.80
Transmembrane Helix	320	340	0.89
Non-Cytoplasmic	341	347	0.82
Transmembrane Helix	348	369	0.93
Cytoplasmic	370	379	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIRKTHPL IKIINHSFID LPTPSNISAW WNFGSLLGIC LIIQIVTGLF LAMHYTSDTS  60
   61 TAFSSVTHIC RDVNYGWLIR YLHANGASMF FICLFIHIGR GIYYGSYLYS ETWNIGIILL 120
  121 FTTMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGTNL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIA ALAMVHLLFL HETGSNNPLG LISDSDKIPF HPYYTIKDLL GLCLLILLLL 240
  241 LLVLFSPDLL GDPSNYTPAN PLSTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALVASILI 300
  301 LAIFPLLHTA KQRSMTFRPL SQCLFWILVA DLITLTWIGG QPVEHPFIII GQLASILYFI 360
  361 IILILMPITS MIENKMLKW