YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170176937, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKVEIDLQ ELIEKGDFKT LKRVLEQQDP ADVKEMIEKL PPDLKVVVFR LLPKDKAAEV  60
   61 FSELEPDDQL ELIKLFREER LKEIFESMDP DDRVELLEEM PANVVKKLLS YLPPQEREEL 120
  121 LYILNYPEDS AARLATTEYV ELFEDMTVRE ALEKVRKEGK KKENIYSLMV IDRTRKLKGT 180
  181 VELRDLIVAD PDQKVSEIMN KDPVFVHAID DQELAAELMK KYDLIILPVV DSEERLIGVI 240
  241 TFDDLVDVIE EEATEDIQKM ASMSATYTSY FHTPAWKLIL KRSPWLVVLL LLESVNGNII 300
  301 SSYEKFLASI PIIAAFIPTM IGSAGNTGAQ ISALMIRGFT LNEISLKDWW KVLLRESLIG 360
  361 STLGLILAGV LYLRAFLISS DPTLNFAVAT ALLVLILYAN IMGALLPFIA RIFKIDPAFM 420
  421 AGPLLTTIVD VTGIMIYFYV VHSFLS

Type	Start	End	Confidence
Cytoplasmic	1	282	0.65
Transmembrane Helix	283	300	0.58
Non-Cytoplasmic	301	311	0.66
Transmembrane Helix	312	336	0.82
Cytoplasmic	337	356	0.83
Transmembrane Helix	357	378	0.89
Non-Cytoplasmic	379	385	0.87
Transmembrane Helix	386	409	0.90
Cytoplasmic	410	418	0.83
Transmembrane Helix	419	441	0.91
Non-Cytoplasmic	442	446	0.87