YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15643638, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERHEEIKKG AWIGILGNTV LAVLKILVGL LTGSYAILAD GIDTSTDIFT SLVILLSSRI  60
   61 SGKPPDETHP YGHERAETIA SKIISFVMFY AGASLLVESV KRLVKQEFSL ELTLTAFIVV 120
  121 GISVAGKTFL FLYKLSLGKR LKSSATISDA LNMRNDIMIS GTVLAGMVAM KTFGWWWLDS 180
  181 LLAIFVSIMI LRTSFSVFYE AAYELMDGMK RTELDMYDDI FAVLERFPNV HNPHRVRIRR 240
  241 VGTKYFIEMD IEVDGKMSVK DAHELTVKIR KEMLKRRDDI EDVTIHVEPL GNVEEEGFGL 300
  301 KKGEKK

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	33	0.84
Non-Cytoplasmic	34	43	0.56
Transmembrane Helix	44	62	0.64
Cytoplasmic	63	77	0.73
Transmembrane Helix	78	97	0.76
Non-Cytoplasmic	98	111	0.75
Transmembrane Helix	112	133	0.90
Cytoplasmic	134	152	0.81
Transmembrane Helix	153	175	0.76
Non-Cytoplasmic	176	180	0.66
Transmembrane Helix	181	202	0.85
Cytoplasmic	203	306	0.93