YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33578045
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WVALVVELQL WATGHTVPAK VVLTPYKPEP GNQCQISQEY YDKKAQMCCA KCPPGQYAKH  60
   61 FCNKTSDTVC ADCAAGMFTQ VWNHLHTCLS CSSSCSDDQV ETHNCTKKQN RVCACNADSY 120
  121 CALKLHSGNC RQCMKLSKCG PGFGVARSRT SNGNVICSAC APGTFSDTTS STDVCRPHRI 180
  181 CSILAIPGNA STDAVCASES PTPSAVPRTI YVSQPEPTRS QPMDQEPGPS QTPHIPVSLG 240
  241 STPIIEPSIT GGISLPIGLI VGLTTLGLLM LGLANCFILV QRKKKPSCLQ RETMVPHLPD 300
  301 DKSQDAIGLE QQHLLTTAPS SSSSSLESSA SAGDRRAPPG GHPQARVTAE AQGSQEACAG 360
  361 SRSSDSSHGS HGTHVNVTCI VNVCSSSDHS SQCSSQASTT VGDPDANPSG SPKDEQVPFS 420
  421 QEECPSQSQW ETTETLQNHD KPFPLGVPDV GMKPNQPGWY D

Type	Start	End	Confidence
Non-Cytoplasmic	1	254	0.88
Transmembrane Helix	255	279	0.85
Cytoplasmic	280	461	0.87