YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33152863, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIGIIKSAR EATMKKDVII IGGGMVGAAT ALGLAKLGLN IALIEKKPLP LFQSDSAYDL  60
   61 RISAISIASV NLLAELGVWQ QIQAMRVCRY DSLETWEVEG FSTRFTAEEI GLDTLGFMVE 120
  121 NKLIQMSLWQ ALNLYSNCQQ IVGFAELTAE YHSAGWTITV DDQTFSTSLI IAADGANSQV 180
  181 RHWAGIGLTS WQYRQHCLLA TVKTALPTQS VTWQQFFPTG PRAFLPLADQ NGCVVWYDAP 240
  241 QRIAELTQLS PEQLALTIMQ NFPTRLGEIE VIQAGSFPLT RQHAQHYTHN GVVLIGDAAH 300
  301 TINPLAGQGV NLGFKDVKVL LEVIRQALEK GQSFADEQVL KQYQQQRKAD NLIMQTSMDL 360
  361 FYKAFKSELF PVKVMRNLAL MLAEKITPLK KQALKYAIGL K

Type	Start	End	Confidence
Cytoplasmic	1	17	0.92
Transmembrane Helix	18	39	0.89
Non-Cytoplasmic	40	401	0.79