YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33152725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.64
Transmembrane Helix	8	27	0.92
Cytoplasmic	28	36	0.66
Transmembrane Helix	37	59	0.89
Non-Cytoplasmic	60	67	0.62
Transmembrane Helix	68	87	0.75
Cytoplasmic	88	95	0.47
Transmembrane Helix	96	121	0.84
Non-Cytoplasmic	122	162	0.66
Transmembrane Helix	163	183	0.91
Cytoplasmic	184	225	0.92
Transmembrane Helix	226	245	0.90
Non-Cytoplasmic	246	251	0.71
Transmembrane Helix	252	271	0.87
Cytoplasmic	272	281	0.84
Transmembrane Helix	282	302	0.90
Non-Cytoplasmic	303	309	0.71
Transmembrane Helix	310	332	0.91
Cytoplasmic	333	342	0.81
Transmembrane Helix	343	363	0.88
Non-Cytoplasmic	364	378	0.80
Transmembrane Helix	379	402	0.88
Cytoplasmic	403	406	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPIVFNGYH TLITATLVLL VGRFFVNKIK VLQDFNIPEA VAGGLIAAVA ILCLYNWFGV  60
   61 SLQFEQSLQN AFMLAFFSSV GLSADFSRLK QGGMPLVIFL VVVSLYIIIQ NVIGVGLASA 120
  121 LGLDPMIGLL TGSITLTGGH GTGAAWAKIF SEEYNITGVM EMAMASATFG LVAGGLIGGP 180
  181 IARRLINKMK KDRSQQITKR VDTSAEQYDG STFEDHDSIR YITASSTIET MALFAACLGF 240
  241 SSIIVNTFPD ISLPQFVWAL GFGVILRNVL TKVFKFDMFD RAIDVFGNAS LSMFLAMALM 300
  301 SIKLWELTGL AGPMLIILVV QTLVMILYGY FVTYRVMGKD YDAAILTAGH CGFGLGATPT 360
  361 AVANMQSVTE KFGSSHKAFL IVPLVGAFFV DILNLAVITS FVDFLR