YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33152643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIMPIIFI AILYGVWKML DLMQLPNTIS ILLVALVFIC GSFWSFYKFS AGPRRKLAIN  60
   61 RKEKQLNRPL TEEEKSEIQP PSLIGDFLAS LFGVLLFVTV LRSFIFEPFQ IPSGSMEPTL 120
  121 RVGDFLVVNK FSYGIKDPIW QNTLIEIGHP QRGDVIVFKA PKQPHIDYIK RVIGVGGDKI 180
  181 KYDSKTQQLT VTHADGQQNV FTYSDAKANA EFFYHGEMQM ERTEKGDITH QILNNPYPFN 240
  241 YEPYLFSQDG QMAGEWTVPA GHYFVMGDNR DNSEDSRFWG FVPEQNIVGK ATFVWLSLDK 300
  301 KANELPTGLR FSRMFSAIK

Type	Start	End	Confidence
Cytoplasmic	1	4	0.53
Transmembrane Helix	5	20	0.51
Non-Cytoplasmic	21	27	0.64
Transmembrane Helix	28	47	0.94
Cytoplasmic	48	82	0.88
Transmembrane Helix	83	106	0.86
Non-Cytoplasmic	107	319	0.92