YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33151930, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISTLQVIL VFLVACVCGA GSILDEFQTH RPLIACTLIG LVLGDLTTGI IVGGSLELLA  60
   61 LGWMNIGAAL APDTALASVI ATILVIVGKQ DISTGIAVAI PLAAAGQVLT YVVRAITVGF 120
  121 QHAADKSVLD GNLARLDWIH FTALLLQAMR IAIPALIVAL TAGTDAVQMM LQAIPDVVTT 180
  181 GLKIAGGFIA VVGYAMVINM MRAGHLMPFF YAGFVVAAFT DFNLVALGVL GTIMAVIYIQ 240
  241 IHPKYHKSQQ VVTLPTANNE LDNRLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.71
Transmembrane Helix	6	24	0.91
Cytoplasmic	25	32	0.68
Transmembrane Helix	33	56	0.86
Non-Cytoplasmic	57	65	0.61
Transmembrane Helix	66	87	0.90
Cytoplasmic	88	94	0.68
Transmembrane Helix	95	115	0.87
Non-Cytoplasmic	116	142	0.72
Transmembrane Helix	143	164	0.84
Cytoplasmic	165	178	0.67
Transmembrane Helix	179	198	0.91
Non-Cytoplasmic	199	216	0.59
Transmembrane Helix	217	239	0.88
Cytoplasmic	240	266	0.82